f5ls

utilities for manipulating Oxford Nanopore Fast5 files

Install

All systems
curl cmd.cat/f5ls.sh
Debian Debian
apt-get install fast5
Ubuntu
apt-get install fast5
image/svg+xml Kali Linux
apt-get install fast5
Windows (WSL2)
sudo apt-get update sudo apt-get install fast5
Dockerfile
dockerfile.run/f5ls

fast5

utilities for manipulating Oxford Nanopore Fast5 files

The data produced by Oxford Nanopore Technologies (ONT) sequencers are stored in fast5 files, based on the HDF5 file format, with one file per sequenced read. This package provides utilities to inspect these files, as well as to pack them for more effficient use.