fa2dna
Short Read Aligner/Mapper from MPG
Install
- All systems
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curl cmd.cat/fa2dna.sh
- Debian
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apt-get install anfo - Ubuntu
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apt-get install anfo - Kali Linux
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apt-get install anfo - Windows (WSL2)
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sudo apt-get updatesudo apt-get install anfo - Raspbian
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apt-get install anfo - Dockerfile
- dockerfile.run/fa2dna
anfo
Short Read Aligner/Mapper from MPG
Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).