falcon_sense
single molecule sequence assembler for genomes
Install
- All systems
-
curl cmd.cat/falcon_sense.sh
- Debian
-
apt-get install canu
- Ubuntu
-
apt-get install canu
- Kali Linux
-
apt-get install canu
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install canu
- Dockerfile
- dockerfile.run/falcon_sense
canu
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: * Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
falconkit
genome assembly toolkit
Falcon is a set of tools for fast aligning long reads for consensus and assembly. It is a simple code collection for efficient assembly of haploid and diploid genomes.