fastQTL

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

Install

All systems
curl cmd.cat/fastQTL.sh
Debian Debian
apt-get install fastqtl
Ubuntu
apt-get install fastqtl
image/svg+xml Kali Linux
apt-get install fastqtl
Windows (WSL2)
sudo apt-get update sudo apt-get install fastqtl
Raspbian
apt-get install fastqtl
Dockerfile
dockerfile.run/fastQTL

fastqtl

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.