fasta_formatter

FASTQ/A short nucleotide reads pre-processing tools

Install

All systems
curl cmd.cat/fasta_formatter.sh
Debian Debian
apt-get install fastx-toolkit
Ubuntu
apt-get install fastx-toolkit
image/svg+xml Kali Linux
apt-get install fastx-toolkit
Fedora
dnf install fastx_toolkit
Raspbian
apt-get install fastx-toolkit

fastx-toolkit

FASTQ/A short nucleotide reads pre-processing tools

The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome—manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.

fastx_toolkit

files