fastp

Ultra-fast all-in-one FASTQ preprocessor

Install

All systems
curl cmd.cat/fastp.sh
Debian Debian
apt-get install fastp
Ubuntu
apt-get install fastp
image/svg+xml Kali Linux
apt-get install fastp
Windows (WSL2)
sudo apt-get update sudo apt-get install fastp
Dockerfile
dockerfile.run/fastp

fastp

Ultra-fast all-in-one FASTQ preprocessor

All-in-one FASTQ preprocessor, fastp provides functions including quality profiling, adapter trimming, read filtering and base correction. It supports both single-end and paired-end short read data and also provides basic support for long-read data.