fastqc
quality control for high throughput sequence data
Install
- All systems
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curl cmd.cat/fastqc.sh
- Debian
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apt-get install fastqc - Ubuntu
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apt-get install fastqc - Kali Linux
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apt-get install fastqc - Windows (WSL2)
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sudo apt-get updatesudo apt-get install fastqc - OS X
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brew install fastqc - Raspbian
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apt-get install fastqc - Dockerfile
- dockerfile.run/fastqc
fastqc
quality control for high throughput sequence data
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application