fdnapenny

EMBOSS conversions of the programs in the phylip package

Install

All systems
curl cmd.cat/fdnapenny.sh
Ubuntu
apt-get install embassy-phylip
image/svg+xml Kali Linux
apt-get install embassy-phylip
Windows (WSL2)
sudo apt-get update sudo apt-get install embassy-phylip
Dockerfile
dockerfile.run/fdnapenny

embassy-phylip

EMBOSS conversions of the programs in the phylip package

This package is the adaptation of the PHYLIP package in which its programs can operate with the biological sequence formats and databases of the European Molecular Biology Open Software Suite (EMBOSS). The software packages adapted for EMBOSS are called EMBASSY. PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters. The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them from the original programs and avoid namespace conflict.