featureCounts

toolkit for processing next-gen sequencing data

Install

All systems
curl cmd.cat/featureCounts.sh
Debian Debian
apt-get install subread
Ubuntu
apt-get install subread
image/svg+xml Kali Linux
apt-get install subread
Windows (WSL2)
sudo apt-get update sudo apt-get install subread
Raspbian
apt-get install subread

subread

toolkit for processing next-gen sequencing data

Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments.