featureCounts
toolkit for processing next-gen sequencing data
Install
- All systems
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curl cmd.cat/featureCounts.sh
- Debian
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apt-get install subread - Ubuntu
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apt-get install subread - Kali Linux
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apt-get install subread - Windows (WSL2)
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sudo apt-get updatesudo apt-get install subread - Raspbian
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apt-get install subread - Dockerfile
- dockerfile.run/featureCounts
subread
toolkit for processing next-gen sequencing data
Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments.