fibxform

Computational Morphometry Toolkit

Install

All systems
curl cmd.cat/fibxform.sh
Debian Debian
apt-get install cmtk
Ubuntu
apt-get install cmtk
image/svg+xml Kali Linux
apt-get install cmtk
Windows (WSL2)
sudo apt-get update sudo apt-get install cmtk
Raspbian
apt-get install cmtk

cmtk

Computational Morphometry Toolkit

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O. The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).