findknownsnps

fast, stringent short-read mapping software

Install

All systems
curl cmd.cat/findknownsnps.sh
Debian Debian
apt-get install snpomatic
Ubuntu
apt-get install snpomatic
image/svg+xml Kali Linux
apt-get install snpomatic
Windows (WSL2)
sudo apt-get update sudo apt-get install snpomatic
Raspbian
apt-get install snpomatic
Dockerfile
dockerfile.run/findknownsnps

snpomatic

fast, stringent short-read mapping software

High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, stringent short-read mapping software. It supports a multitude of output types and formats, for uses in filtering reads, alignments, sequence-based genotyping calls, assisted reassembly of contigs etc.