flexbar
flexible barcode and adapter removal for sequencing platforms
Install
- All systems
-
curl cmd.cat/flexbar.sh
- Debian
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apt-get install flexbar - Ubuntu
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apt-get install flexbar - Kali Linux
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apt-get install flexbar - Windows (WSL2)
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sudo apt-get updatesudo apt-get install flexbar - Raspbian
-
apt-get install flexbar - Dockerfile
- dockerfile.run/flexbar
flexbar
flexible barcode and adapter removal for sequencing platforms
Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform. Parameter names changed in Flexbar. Please review scripts. The recent months, default settings were optimised, several bugs were fixed and various improvements were made, e.g. revamped command-line interface, new trimming modes as well as lower time and memory requirements.