fml-asm
tool for assembling Illumina short reads in small regions
Install
- All systems
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curl cmd.cat/fml-asm.sh
- Debian
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apt-get install fml-asm - Ubuntu
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apt-get install fml-asm - Kali Linux
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apt-get install fml-asm - Windows (WSL2)
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sudo apt-get updatesudo apt-get install fml-asm - Dockerfile
- dockerfile.run/fml-asm
fml-asm
tool for assembling Illumina short reads in small regions
Fml-asm is a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size, based on the fermi-lite library. It is largely a light-weight in-memory version of fermikit without generating any intermediate files. It inherits the performance, the relatively small memory footprint and the features of fermikit. In particular, fermi-lite is able to retain heterozygous events and thus can be used to assemble diploid regions for the purpose of variant calling.