geneparse-mpi
homology detection tool across multiple large genomes (MPI-version)
Install
- All systems
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curl cmd.cat/geneparse-mpi.sh
- Debian
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apt-get install murasaki-mpi - Ubuntu
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apt-get install murasaki-mpi - Kali Linux
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apt-get install murasaki-mpi - Windows (WSL2)
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sudo apt-get updatesudo apt-get install murasaki-mpi - Raspbian
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apt-get install murasaki-mpi - Dockerfile
- dockerfile.run/geneparse-mpi
murasaki-mpi
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.