geneparse-mpi

homology detection tool across multiple large genomes (MPI-version)

Install

All systems
curl cmd.cat/geneparse-mpi.sh
Debian Debian
apt-get install murasaki-mpi
Ubuntu
apt-get install murasaki-mpi
image/svg+xml Kali Linux
apt-get install murasaki-mpi
Windows (WSL2)
sudo apt-get update sudo apt-get install murasaki-mpi
Raspbian
apt-get install murasaki-mpi
Dockerfile
dockerfile.run/geneparse-mpi

murasaki-mpi

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.