generate_test_clusters
tool for clustering millions of short DNA sequences
Install
- All systems
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curl cmd.cat/generate_test_clusters.sh
- Debian
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apt-get install dnaclust - Ubuntu
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apt-get install dnaclust - Kali Linux
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apt-get install dnaclust - Windows (WSL2)
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sudo apt-get updatesudo apt-get install dnaclust - Raspbian
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apt-get install dnaclust - Dockerfile
- dockerfile.run/generate_test_clusters
dnaclust
tool for clustering millions of short DNA sequences
dnaclust is a tool for clustering large number of short DNA sequences. The clusters are created in such a way that the "radius" of each clusters is no more than the specified threshold. The input sequences to be clustered should be in Fasta format. The id of each sequence is based on the first word of the seqeunce in the Fasta format. The first word is the prefix of the header up to the first occurrence of white space characters in the header.