gffutils-cli

Work with GFF and GTF files in a flexible database framework

Install

All systems
curl cmd.cat/gffutils-cli.sh
Debian Debian
apt-get install python3-gffutils
Ubuntu
apt-get install python3-gffutils
image/svg+xml Kali Linux
apt-get install python3-gffutils
Windows (WSL2)
sudo apt-get update sudo apt-get install python3-gffutils
Dockerfile
dockerfile.run/gffutils-cli

python3-gffutils

Work with GFF and GTF files in a flexible database framework

A Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations. Files are loaded into a sqlite3 database, allowing much more complex manipulation of hierarchical features (e.g., genes, transcripts, and exons) than is possible with plain-text methods alone.