giira

RNA-Seq driven gene finding incorporating ambiguous reads

Install

All systems
curl cmd.cat/giira.sh
Debian Debian
apt-get install giira
Ubuntu
apt-get install giira
image/svg+xml Kali Linux
apt-get install giira
Windows (WSL2)
sudo apt-get update sudo apt-get install giira

giira

RNA-Seq driven gene finding incorporating ambiguous reads

GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.