gmod_bulk_load_gff3.pl
tools to add/extract data from Chado
Install
- All systems
-
curl cmd.cat/gmod_bulk_load_gff3.pl.sh
- Debian
-
apt-get install chado-utils
- Ubuntu
-
apt-get install chado-utils
- Kali Linux
-
apt-get install chado-utils
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install chado-utils
- Raspbian
-
apt-get install chado-utils
- Dockerfile
- dockerfile.run/gmod_bulk_load_gff3.pl
chado-utils
tools to add/extract data from Chado
This package contains several tools that can be used to extract data from Chado database or prepare data before upload. It is a subset above the Chado database schema and libraries. Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny.
libchado-perl
database schema and tools for genomic data
Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.