grepseq

Python3 bioinformatics utilities for high-throughput genomic sequencing

Install

All systems
curl cmd.cat/grepseq.sh
Debian Debian
apt-get install python3-biotools
Ubuntu
apt-get install python3-biotools
image/svg+xml Kali Linux
apt-get install python3-biotools
Windows (WSL2)
sudo apt-get update sudo apt-get install python3-biotools
Dockerfile
dockerfile.run/grepseq

python3-biotools

Python3 bioinformatics utilities for high-throughput genomic sequencing

This package contains utilities like biotools.align - align sequences (hybrid between Needleman-Wunsch and Smith-Waterman which is used to find the subsequence within a larger sequence that best aligns to a reference) biotools.annotation - create annotation files. The annotations can be used to create a hierarchy among the annotations biotools.BLAST - manage BLAST databases and interface with the BLAST+ standalone program available from NCBI. biotools.clustal - interface to clustalw global (multiple nucleotide or peptide sequence alignment) biotools.complement - creates the complement of a sequence, which can then be reversed biotools.sequence - various tools to deal with sequences biotools.translate - translate a nucleotide using the standard genetic code This package contains the Python3 module.