harvesttools
archiving and postprocessing for reference-compressed genomic multi-alignments
Install
- All systems
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curl cmd.cat/harvesttools.sh
- Debian
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apt-get install harvest-tools - Ubuntu
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apt-get install harvest-tools - Kali Linux
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apt-get install harvest-tools - Windows (WSL2)
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sudo apt-get updatesudo apt-get install harvest-tools - Raspbian
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apt-get install harvest-tools - Dockerfile
- dockerfile.run/harvesttools
harvest-tools
archiving and postprocessing for reference-compressed genomic multi-alignments
HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats.