hinge
long read genome assembler based on hinging
Install
- All systems
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curl cmd.cat/hinge.sh
- Debian
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apt-get install hinge - Ubuntu
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apt-get install hinge - Kali Linux
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apt-get install hinge - Windows (WSL2)
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sudo apt-get updatesudo apt-get install hinge - Dockerfile
- dockerfile.run/hinge
hinge
long read genome assembler based on hinging
HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.