hinge

long read genome assembler based on hinging

Install

All systems
curl cmd.cat/hinge.sh
Debian Debian
apt-get install hinge
Ubuntu
apt-get install hinge
image/svg+xml Kali Linux
apt-get install hinge
Windows (WSL2)
sudo apt-get update sudo apt-get install hinge
Dockerfile
dockerfile.run/hinge

hinge

long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.