hist

MCMC linkage analysis on general pedigrees

Install

All systems
curl cmd.cat/hist.sh
Debian Debian
apt-get install loki
Ubuntu
apt-get install loki
Arch Arch Linux
pacman -S plan9port
image/svg+xml Kali Linux
apt-get install loki
Windows (WSL2)
sudo apt-get update sudo apt-get install loki
OS X
brew install historian
Raspbian
apt-get install loki
Dockerfile
dockerfile.run/hist

loki

MCMC linkage analysis on general pedigrees

Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses.

plan9port

Ports of applications from Plan 9

historian