hmm2fetch
profile hidden Markov models for protein sequence analysis
Install
- All systems
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curl cmd.cat/hmm2fetch.sh
- Debian
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apt-get install hmmer2 - Ubuntu
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apt-get install hmmer2 - Kali Linux
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apt-get install hmmer2 - Windows (WSL2)
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sudo apt-get updatesudo apt-get install hmmer2 - Raspbian
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apt-get install hmmer2 - Dockerfile
- dockerfile.run/hmm2fetch
hmmer2
profile hidden Markov models for protein sequence analysis
HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.