hmm_train
phylogenetic analysis with space/time models
Install
- All systems
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curl cmd.cat/hmm_train.sh
- Debian
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apt-get install phast - Ubuntu
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apt-get install phast - Kali Linux
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apt-get install phast - Windows (WSL2)
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sudo apt-get updatesudo apt-get install phast - Dockerfile
- dockerfile.run/hmm_train
phast
phylogenetic analysis with space/time models
PHAST is a software package for comparative and evolutionary genomics. It consists of about half a dozen major programs, plus more than a dozen utilities for manipulating sequence alignments, phylogenetic trees, and genomic annotations. For the most part, PHAST focuses on two kinds of applications: the identification of novel functional elements, including protein-coding exons and evolutionarily conserved sequences; and statistical phylogenetic modeling, including estimation of model parameters, detection of signatures of selection, and reconstruction of ancestral sequences. PHAST does not support phylogeny reconstruction or sequence alignment, and it is designed for use with DNA sequences only (see Comparison).