hmmstat

profile hidden Markov models for protein sequence analysis

Install

All systems
curl cmd.cat/hmmstat.sh
Debian Debian
apt-get install hmmer
Ubuntu
apt-get install hmmer
image/svg+xml Kali Linux
apt-get install hmmer
Fedora
dnf install hmmer
Windows (WSL2)
sudo apt-get update sudo apt-get install hmmer
OS X
brew install hmmer
Raspbian
apt-get install hmmer
Dockerfile
dockerfile.run/hmmstat

hmmer

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.