htseq-count
Python high-throughput genome sequencing read analysis utilities
Install
- All systems
-
curl cmd.cat/htseq-count.sh
- Debian
-
apt-get install python-htseq - Ubuntu
-
apt-get install python-htseq - Kali Linux
-
apt-get install python3-htseq - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install python-htseq - Raspbian
-
apt-get install python-htseq - Dockerfile
- dockerfile.run/htseq-count
python-htseq
Python high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks when working with high-throughput genome sequencing reads: * Getting statistical summaries about the base-call quality scores to study the data quality. * Calculating a coverage vector and exporting it for visualization in a genome browser. * Reading in annotation data from a GFF file. * Assigning aligned reads from an RNA-Seq experiments to exons and genes. This package contains the Python 2 module.
python3-htseq
Python3 high-throughput genome sequencing read analysis utilities
HTSeq can be used to performing a number of common analysis tasks when working with high-throughput genome sequencing reads: * Getting statistical summaries about the base-call quality scores to study the data quality. * Calculating a coverage vector and exporting it for visualization in a genome browser. * Reading in annotation data from a GFF file. * Assigning aligned reads from an RNA-Seq experiments to exons and genes. This package contains the Python 3 module.