ilink
faster version of pedigree programs of Linkage
Install
- All systems
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curl cmd.cat/ilink.sh
- Debian
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apt-get install fastlink - Ubuntu
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apt-get install fastlink - Kali Linux
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apt-get install fastlink - Windows (WSL2)
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sudo apt-get updatesudo apt-get install fastlink - Raspbian
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apt-get install fastlink - Dockerfile
- dockerfile.run/ilink
fastlink
faster version of pedigree programs of Linkage
Genetic linkage analysis is a statistical technique used to map genes and find the approximate location of disease genes. There was a standard software package for genetic linkage called LINKAGE. FASTLINK is a significantly modified and improved version of the main programs of LINKAGE that runs much faster sequentially, can run in parallel, allows the user to recover gracefully from a computer crash, and provides abundant new documentation. FASTLINK has been used in over 1000 published genetic linkage studies. This package contains the following programs: ilink: GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions linkmap: calculates location scores of one locus against a fixed map of other loci lodscore: compares likelihoods at locally optimal theta mlink: calculates lod scores and risk with two of more loci unknown: identify possible genotypes for unknowns