iqtree-mpi

efficient phylogenetic software by maximum likelihood

Install

All systems
curl cmd.cat/iqtree-mpi.sh
Debian Debian
apt-get install iqtree
Ubuntu
apt-get install iqtree
image/svg+xml Kali Linux
apt-get install iqtree
Windows (WSL2)
sudo apt-get update sudo apt-get install iqtree
Dockerfile
dockerfile.run/iqtree-mpi

iqtree

efficient phylogenetic software by maximum likelihood

IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others: * A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (see Nguyen et al., 2015) * An ultrafast bootstrap approximation to assess branch supports (see Minh et al., 2013). * A wide range of substitution models for binary, DNA, protein, codon, and morphological alignments. * Ultrafast model selection for all data types, 10 to 100 times faster than jModelTest and ProtTest. * Finding best partition scheme like PartitionFinder. * Partitioned models with mixed data types for phylogenomic (multi- gene) alignments, allowing for separate, proportional, or joint branch lengths among genes. * Supporting the phylogenetic likelihod library (PLL) (see Flouri et al., 2014)