itksnap
semi-automatic segmentation of structures in 3D images
Install
- All systems
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curl cmd.cat/itksnap.sh
- Debian
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apt-get install itksnap - Ubuntu
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apt-get install itksnap - Kali Linux
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apt-get install itksnap - Windows (WSL2)
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sudo apt-get updatesudo apt-get install itksnap - Raspbian
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apt-get install itksnap - Dockerfile
- dockerfile.run/itksnap
itksnap
semi-automatic segmentation of structures in 3D images
SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active contour methods, as well as manual delineation and image navigation. Noteworthy features are: * Linked cursor for seamless 3D navigation * Manual segmentation in three orthogonal planes at once * Support for many different 3D image formats, including NIfTI * Support for concurrent, linked viewing and segmentation of multiple images * Limited support for color images (e.g., diffusion tensor maps) * 3D cut-plane tool for fast post-processing of segmentation results