jaligner

Smith-Waterman algorithm with Gotoh's improvement

Install

All systems
curl cmd.cat/jaligner.sh
Debian Debian
apt-get install jaligner
Ubuntu
apt-get install jaligner
image/svg+xml Kali Linux
apt-get install jaligner
Windows (WSL2)
sudo apt-get update sudo apt-get install jaligner
Raspbian
apt-get install jaligner

jaligner

Smith-Waterman algorithm with Gotoh's improvement

JAligner is an open source Java implementation of the Smith-Waterman algorithm with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.