jmodeltest
HPC selection of models of nucleotide substitution
Install
- All systems
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curl cmd.cat/jmodeltest.sh
- Debian
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apt-get install jmodeltest - Ubuntu
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apt-get install jmodeltest - Kali Linux
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apt-get install jmodeltest - Windows (WSL2)
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sudo apt-get updatesudo apt-get install jmodeltest - Raspbian
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apt-get install jmodeltest - Dockerfile
- dockerfile.run/jmodeltest
jmodeltest
HPC selection of models of nucleotide substitution
jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC), and a decision theory method (DT). It also provides estimates of model selection uncertainty, parameter importances and model-averaged parameter estimates, including model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree optimization, model- averaged phylogenetic trees (both topology and branch length), heuristic filtering and automatic logging of user activity.