lagan
highly parametrizable pairwise global genome sequence aligner
Install
- All systems
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curl cmd.cat/lagan.sh
- Debian
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apt-get install lagan - Ubuntu
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apt-get install lagan - Kali Linux
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apt-get install lagan - Fedora
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dnf install lagan - Windows (WSL2)
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sudo apt-get updatesudo apt-get install lagan - Dockerfile
- dockerfile.run/lagan
lagan
highly parametrizable pairwise global genome sequence aligner
Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.