lamarc

Likelihood Analysis with Metropolis Algorithm using Random Coalescence

Install

All systems
curl cmd.cat/lamarc.sh
Debian Debian
apt-get install lamarc
Ubuntu
apt-get install lamarc
image/svg+xml Kali Linux
apt-get install lamarc
Windows (WSL2)
sudo apt-get update sudo apt-get install lamarc
Dockerfile
dockerfile.run/lamarc

lamarc

Likelihood Analysis with Metropolis Algorithm using Random Coalescence

LAMARC is a program which estimates population-genetic parameters such as population size, population growth rate, recombination rate, and migration rates. It approximates a summation over all possible genealogies that could explain the observed sample, which may be sequence, SNP, microsatellite, or electrophoretic data. LAMARC and its sister program Migrate are successor programs to the older programs Coalesce, Fluctuate, and Recombine, which are no longer being supported. The programs are memory-intensive but can run effectively on workstations.