leaff

biological sequence library utilities and applications

Install

All systems
curl cmd.cat/leaff.sh
Debian Debian
apt-get install leaff
Ubuntu
apt-get install leaff
image/svg+xml Kali Linux
apt-get install leaff
Windows (WSL2)
sudo apt-get update sudo apt-get install leaff
Raspbian
apt-get install leaff
Dockerfile
dockerfile.run/leaff

leaff

biological sequence library utilities and applications

LEAFF (Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions. This package is part of the Kmer suite.

canu

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: * Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences