long_spanning_reads
fast splice junction mapper for RNA-Seq reads
Install
- All systems
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curl cmd.cat/long_spanning_reads.sh
- Debian
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apt-get install tophat - Ubuntu
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apt-get install tophat - Kali Linux
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apt-get install tophat - Windows (WSL2)
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sudo apt-get updatesudo apt-get install tophat - Raspbian
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apt-get install tophat - Dockerfile
- dockerfile.run/long_spanning_reads
tophat
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.