ltrsift_encode
postprocessing and classification of LTR retrotransposons
Install
- All systems
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curl cmd.cat/ltrsift_encode.sh
- Debian
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apt-get install ltrsift - Ubuntu
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apt-get install ltrsift - Kali Linux
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apt-get install ltrsift - Windows (WSL2)
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sudo apt-get updatesudo apt-get install ltrsift - Raspbian
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apt-get install ltrsift - Dockerfile
- dockerfile.run/ltrsift_encode
ltrsift
postprocessing and classification of LTR retrotransposons
LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.