ltrsift_encode

postprocessing and classification of LTR retrotransposons

Install

All systems
curl cmd.cat/ltrsift_encode.sh
Debian Debian
apt-get install ltrsift
Ubuntu
apt-get install ltrsift
image/svg+xml Kali Linux
apt-get install ltrsift
Windows (WSL2)
sudo apt-get update sudo apt-get install ltrsift
Raspbian
apt-get install ltrsift
Dockerfile
dockerfile.run/ltrsift_encode

ltrsift

postprocessing and classification of LTR retrotransposons

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.