mafft-fftnsi
Multiple alignment program for amino acid or nucleotide sequences
Install
- All systems
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curl cmd.cat/mafft-fftnsi.sh
- Debian
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apt-get install mafft - Ubuntu
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apt-get install mafft - Kali Linux
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apt-get install mafft - Windows (WSL2)
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sudo apt-get updatesudo apt-get install mafft - OS X
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brew install mafft - Raspbian
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apt-get install mafft - Dockerfile
- dockerfile.run/mafft-fftnsi
mafft
Multiple alignment program for amino acid or nucleotide sequences
MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm).
arb
phylogenetic sequence analysis suite - main program
ARB is a graphical suite of tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the sequence entries is structured according to phylogeny or other user-defined criteria. The ARB project (from the Latin "arbor", a tree) is a joint initiative of the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation http://wwwbode.informatik.tu-muenchen.de/ of the Technical University of Munich.