mafft-homologs

Multiple alignment program for amino acid or nucleotide sequences

Install

All systems
curl cmd.cat/mafft-homologs.sh
Debian Debian
apt-get install mafft
Ubuntu
apt-get install mafft
image/svg+xml Kali Linux
apt-get install mafft
Windows (WSL2)
sudo apt-get update sudo apt-get install mafft
OS X
brew install mafft
Raspbian
apt-get install mafft
Dockerfile
dockerfile.run/mafft-homologs

mafft

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm).