maq.pl

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Install

All systems
curl cmd.cat/maq.pl.sh
Debian Debian
apt-get install maq
Ubuntu
apt-get install maq
image/svg+xml Kali Linux
apt-get install maq
Windows (WSL2)
sudo apt-get update sudo apt-get install maq
Raspbian
apt-get install maq
Dockerfile
dockerfile.run/maq.pl

maq

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2. Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.