mauve-contig-mover

multiple genome alignment

Install

All systems
curl cmd.cat/mauve-contig-mover.sh
Debian Debian
apt-get install mauve-aligner
Ubuntu
apt-get install mauve-aligner
image/svg+xml Kali Linux
apt-get install mauve-aligner
Windows (WSL2)
sudo apt-get update sudo apt-get install mauve-aligner
Raspbian
apt-get install mauve-aligner

mauve-aligner

multiple genome alignment

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. Mauve is developed at the University of Wisconsin.