mbfa

homology detection tool across multiple large genomes

Install

All systems
curl cmd.cat/mbfa.sh
Debian Debian
apt-get install murasaki
Ubuntu
apt-get install murasaki
image/svg+xml Kali Linux
apt-get install murasaki
Windows (WSL2)
sudo apt-get update sudo apt-get install murasaki
Raspbian
apt-get install murasaki
Dockerfile
dockerfile.run/mbfa

murasaki

homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction