md5fa
processing sequence alignments in SAM and BAM formats
Install
- All systems
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curl cmd.cat/md5fa.sh
- Debian
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apt-get install samtools - Ubuntu
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apt-get install samtools - Kali Linux
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apt-get install samtools - Fedora
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dnf install samtools - Windows (WSL2)
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sudo apt-get updatesudo apt-get install samtools - OS X
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brew install samtools - Raspbian
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apt-get install samtools - Dockerfile
- dockerfile.run/md5fa
samtools
processing sequence alignments in SAM and BAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM (not SAM) file on a remote FTP or HTTP server.