metaphlan2-data-convert

data package for Metagenomic Phylogenetic Analysis

Install

All systems
curl cmd.cat/metaphlan2-data-convert.sh
Debian Debian
apt-get install metaphlan2-data
Ubuntu
apt-get install metaphlan2-data
image/svg+xml Kali Linux
apt-get install metaphlan2-data
Windows (WSL2)
sudo apt-get update sudo apt-get install metaphlan2-data
Raspbian
apt-get install metaphlan2-data
Dockerfile
dockerfile.run/metaphlan2-data-convert

metaphlan2-data

data package for Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species. MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at src/utils/markers_info.txt.bz2 or here) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing: * unambiguous taxonomic assignments; * accurate estimation of organismal relative abundance; * species-level resolution for bacteria, archaea, eukaryotes and viruses; * strain identification and tracking * orders of magnitude speedups compared to existing methods. * metagenomic strain-level population genomics This package contains the data for metaphlan2.