mhap
locality-sensitive hashing to detect long-read overlaps
Install
- All systems
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curl cmd.cat/mhap.sh
- Debian
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apt-get install mhap - Ubuntu
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apt-get install mhap - Kali Linux
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apt-get install mhap - Windows (WSL2)
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sudo apt-get updatesudo apt-get install mhap - Raspbian
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apt-get install mhap - Dockerfile
- dockerfile.run/mhap
mhap
locality-sensitive hashing to detect long-read overlaps
The MinHash Alignment Process (MHAP--pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).