miniasm
ultrafast de novo assembler for long noisy DNA sequencing reads
Install
- All systems
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curl cmd.cat/miniasm.sh
- Debian
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apt-get install miniasm - Ubuntu
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apt-get install miniasm - Kali Linux
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apt-get install miniasm - Windows (WSL2)
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sudo apt-get updatesudo apt-get install miniasm - Raspbian
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apt-get install miniasm - Dockerfile
- dockerfile.run/miniasm
miniasm
ultrafast de novo assembler for long noisy DNA sequencing reads
Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.