minimac4
Fast Imputation Based on State Space Reduction HMM
Install
- All systems
-
curl cmd.cat/minimac4.sh
- Debian
-
apt-get install minimac4
- Ubuntu
-
apt-get install minimac4
- Kali Linux
-
apt-get install minimac4
- Windows (WSL2)
-
sudo apt-get update
sudo apt-get install minimac4
- Dockerfile
- dockerfile.run/minimac4
minimac4
Fast Imputation Based on State Space Reduction HMM
Minimac4 is a lower memory and more computationally efficient implementation of "minimac2/3". It is an algorithm for genotypic imputation that works on phased genotypes (say from MaCH). Minimac4 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. This algorithm analyzes only the unique sets of haplotypes in small genomic segments, thereby saving on time\-complexity, computational memory but no loss in degree of accuracy.