mpialign
parallel local alignment of biological sequences
Install
- All systems
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curl cmd.cat/mpialign.sh
- Debian
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apt-get install zalign - Ubuntu
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apt-get install zalign - Kali Linux
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apt-get install zalign - Windows (WSL2)
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sudo apt-get updatesudo apt-get install zalign - Raspbian
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apt-get install zalign - Dockerfile
- dockerfile.run/mpialign
zalign
parallel local alignment of biological sequences
zAlign is a local sequence aligner, especially intended for use with large biological DNA sequences, with more than 1Mbp (Millions of base pairs). It uses the Smith-Waterman exact algorithm with affine gap cost function to perform this task. zAlign can be used both in distributed (clusters, for example) or standalone environments. Currently it has been tested on Linux and Sun Solaris, using both the MPICH (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI (http://www.open-mpi.org/) implementations. Ports for other Unix-like environments are highly considered.