nanook_split_reads.pl

pre- and post-alignment analysis of nanopore sequencing data

Install

All systems
curl cmd.cat/nanook_split_reads.pl.sh
Debian Debian
apt-get install nanook
Ubuntu
apt-get install nanook
image/svg+xml Kali Linux
apt-get install nanook
Windows (WSL2)
sudo apt-get update sudo apt-get install nanook
Dockerfile
dockerfile.run/nanook_split_reads.pl

nanook

pre- and post-alignment analysis of nanopore sequencing data

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles. NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.