patman

rapid alignment of short sequences to large databases

Install

All systems
curl cmd.cat/patman.sh
Debian Debian
apt-get install patman
Ubuntu
apt-get install patman
image/svg+xml Kali Linux
apt-get install patman
Windows (WSL2)
sudo apt-get update sudo apt-get install patman
Dockerfile
dockerfile.run/patman

patman

rapid alignment of short sequences to large databases

Patman searches for short patterns in large DNA databases, allowing for approximate matches. It is optimized for searching for many small pattern at the same time, for example microarray probes.