pbindexdump
processing Pacific Biosciences binary alignment/map files
Install
- All systems
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curl cmd.cat/pbindexdump.sh
- Debian
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apt-get install pbbamtools - Ubuntu
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apt-get install pbbamtools - Kali Linux
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apt-get install pbbamtools - Windows (WSL2)
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sudo apt-get updatesudo apt-get install pbbamtools - Raspbian
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apt-get install pbbamtools - Dockerfile
- dockerfile.run/pbindexdump
pbbamtools
processing Pacific Biosciences binary alignment/map files
The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group. PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information. This package provides command-line utilities for working with PacBio BAM files.